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These light and delicious bakery style lemon poppy seed muffins are easy to make. They boast a beautiful sweet flavor with a tart lemon glaze on top as well as crunchy coarse sugar to finish them off perfectly. Serve one of these bakery-style lemon poppy seed muffins with your morning coffee or enjoy one as a mid-morning snack or even a late-afternoon treat. A lemon poppy seed muffin is great at any time of the day!

Lemon poppy seed muffins boast a delicate citrusy taste and the crunch of poppy seeds and coarse sugar on top of the glaze. These are easily as good as bakery muffins!
Also try bakery-style blueberry muffins, apple cinnamon muffins, Oreo muffins, or carrot blueberry muffins. And these pistachio muffins are so good!
Why You’ll Love It
Easy to make: You simply need to combine the ingredients for the muffin batter and then bake the muffins, before adding a simple glaze and sprinkling of coarse sugar on top.
They taste great: The sweet yet tart lemon taste works really well in these muffins, and the use of fresh ingredients like fresh lemon juice and zest makes the flavor really shine.
Always satisfying: A lemon poppy seed muffin is always satisfying, whether you’re enjoying one for breakfast, brunch, a snack, or dessert.
Lemon Poppy Seed Muffin Ingredients
A complete list of ingredients and amounts can be found in the recipe card below
All-purpose flour: Regular all-purpose flour is perfect for making these. You can also use your favorite gluten-free flour to make them.
Sugar: White sugar goes into the muffin batter, the syrup glaze on top and then you need coarse sugar for sprinkling on top to add a nice crunch.
Yogurt: This ingredient adds a nice tang to the flavor and also helps keep the lemon poppy seed muffins moist.
Lemon juice and zest: For the best flavor, use fresh lemon juice and lemon zest.
Baking powder and baking soda: These help to achieve a light and airy texture.
Poppy seeds: For flavor and crunch. Poppy seeds go really well with citrus flavors and are also a nutritious choice.
How to Make Lemon Poppy Seed Muffins
For more detailed instructions with weights and measurements, jump to the printable recipe card
Combine the dry ingredients: Mix the flour, sugar, poppy seeds, baking powder, and baking soda together in a bowl.
Combine the wet ingredients: Whisk the yogurt with the lemon juice, lemon zest, and eggs in a second bowl, and then combine this mixture with the dry mixture. Fold in the melted butter.
Bake the lemon poppy seed muffins: Divide the batter between 12 muffin liners in a muffin pan and bake in a preheated oven for 25 minutes.
Make the lemon syrup glaze: Stir the granulated sugar with the lemon juice in a saucepan and cook for 5 minutes or until thick and bubbly.
Glaze the muffins: Brush the lemon syrup over the tops of the cooked muffins and then sprinkle coarse sugar to finish. These are great served warm.
Substitutions and Variations
Gluten-free option: If you want a gluten-free version, you can use your preferred brand of gluten-free flour.
Not a seed fan? If you aren’t keen on seeds or you can’t eat them, you can simply leave the poppy seeds out.
A different type of citrus: You can sub orange juice and orange zest to make orange muffins, or even try lime instead.
Serving Suggestions
More brunch items: If you’re serving these for brunch, you might like to whip up some other brunch dishes such as sheet pan eggs, a breakfast crunchwrap or even rainbow unicorn toast.
And to drink: Pair the lemon poppy seed muffins with a pumpkin spice latte, cinnamon dolce latte, or, for a celebratory brunch, a sherbet champagne mimosa (or two!)
How to Store Lemon Muffins
Store: Keeping them in the refrigerator dries them out, so keep your homemade muffins in an airtight container and eat within 4 days.
Freeze: You can freeze them for up to 3 months.
Thaw: That at room temperature or using the thaw setting on the microwave.
Reheat: Wrap in foil and put in a 350 degrees F oven for a few minutes from fresh or about 10 minutes from frozen. You can also give fresh muffins a few seconds in the microwave to warm them through.
Top Tips
Keep them fresh: Put paper towels between each layer of muffins in the airtight container plus one on top. This absorbs excess moisture and helps them stay fresh for longer.
Combine the wet and dry mixtures: To make the best muffins, you can’t just dump all the ingredients in a bowl and stir them. It’s important to make a dry mixture in one bowl and a wet mixture in another, and then mix the wet mixture into the dry one. Overmixing creates too much gluten (and this would happen if you mixed everything all at once) and too much gluten results in tough muffins instead of these tender muffins!
Lemon Poppy Seed Muffin FAQs
It’s up to you. Choose from plain yogurt or Greek yogurt. Another option would be using half yogurt and half buttermilk or half yogurt and half sour cream.
Also known as decorating sugar or pearl sugar, coarse sugar adds a lovely crunch on top of muffins, cupcakes, and other baked items. Coarse sugar is also more resistant to heat than smaller sugar crystals and doesn’t dissolve as readily.
There are two reasons for this. First, you are dissolving the sugar with the lemon juice to make the glaze and second, you are adding coarse sugar on top for crunch so a little extra won’t make any difference. A lot of frostings and glazes do use powdered sugar because a crunch is not wanted. But it works well here and complements the crunch from the poppy seeds too.
Lemon Poppy Seed Muffin Recipe
Lemon Poppy Seed Muffins
Ingredients
For the Muffins:
- 3 Cups all purpose flour
- 1 Cup granulated sugar
- 2 Tablespoons poppy seeds
- 1 Tablespoon baking powder
- 1/2 Teaspoon baking soda
- 1/2 Teaspoon salt
- 1 1/2 Cups plain yogurt
- 2 Tablespoons lemon juice, fresh
- 1 1/2 Tablespoons lemon zest, grated
- 2 eggs
- 8 Tablespoons unsalted butter, melted and cooled
For the Syrup:
- 1/4 Cup lemon juice, fresh
- 1/4 Cup granulated sugar
- 2 Tablespoons granulated sugar, coarse
Instructions
- Preheat the oven to 375 degrees F. Add muffin liners to a 12-cup muffin tin.
- In a large bowl, combine the all-purpose flour, granulated sugar, poppy seeds, baking powder, and baking soda with a mixing spoon.
- In another large bowl, whisk together the whole milk yogurt, lemon juice, lemon zest, and eggs.
- Pour the wet ingredients in with the dry ingredients, then mix. Pour the melted butter into the bowl and fold until just combined.
- Using a large cookie scoop, divide the batter equally amongst the lined muffin tin. Place the muffin tin on the middle oven row and bake for 25 minutes.
- Once the muffins finish baking, start on the lemon syrup. Add the lemon juice and granulated sugar to a saucepan and stir over medium heat. The mixture should bubble up and thicken after about 5 minutes.
- Brush the tops of the muffins generously with the lemon syrup, then sprinkle 1 or 2 pinches of coarse sugar over each muffin.
Notes
Nutrition
These lemon poppy seed muffins boast lemon juice and lemon zest for an incredible lemon flavor in every bite. The tart lemon glaze on top and sprinkling of coarse sugar finishes them off perfectly. These are just as good as, or even better than, bakery muffins! They can be served warm from the oven or at room temperature. With their bright lemon flavor and crunchy poppy seeds, these are truly delicious muffins.
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Bella Bucchiotti
Bella Bucchiotti is a Canadian-based syndicated food, travel, and lifestyle writer, photographer, and creator at xoxoBella. She founded xoxoBella in 2015, where she shares her love for food, dogs, sustainability, fitness, crafts, outdoor adventures, travel, and philanthropy to encourage others to run the extra mile, try new recipes, visit unfamiliar places, and stand for a cause. Bella creates stress-free and family-friendly recipes for weeknight dinners and festive feasts.
These lemon poppy seed muffins were a perfect treat with my coffee! So light and flavorful
How can I say no to this classic? It is good every single time. Thanks for sharing the recipe.